Codon Stability Coefficients
csc_default.Rd![[Experimental]](figures/lifecycle-experimental.svg)
Codon stability coefficients (CSCs) objects.
Usage
csc_default()
csc_hela_endo()
csc_k562_orfome()
csc_k562_slam()
csc_rpe_endo()
csc_x293t_endo()
csc_x293t_orfome()Examples
csc_default()
#> AAA AAC AAG AAT ACA ACC
#> -0.07906900 -0.01422550 0.09540522 -0.06440400 -0.02791650 0.04424593
#> ACG ACT AGA AGC AGG AGT
#> 0.01108929 -0.12624130 -0.06878430 -0.09559080 -0.04549540 -0.14633200
#> ATA ATC ATG ATT CAA CAC
#> -0.03245480 0.13616115 0.11305209 0.02376783 -0.10703630 -0.11145590
#> CAG CAT CCA CCC CCG CCT
#> -0.01742640 -0.15979520 -0.05000270 -0.03780900 -0.04526170 -0.06096270
#> CGA CGC CGG CGT CTA CTC
#> 0.00875125 0.01422479 0.06893964 0.04548627 0.00337154 0.04979430
#> CTG CTT GAA GAC GAG GAT
#> 0.11508931 -0.03947050 -0.04615410 0.05094325 0.06121139 0.03671074
#> GCA GCC GCG GCT GGA GGC
#> 0.05492040 0.06784874 0.00557842 0.10245019 0.02588074 0.03644761
#> GGG GGT GTA GTC GTG GTT
#> 0.02619345 0.05504247 -0.01229950 0.10173224 0.12053024 0.01492908
#> TAC TAT TCA TCC TCG TCT
#> 0.05580312 -0.00685410 -0.13672100 -0.05952560 -0.05869680 -0.10389860
#> TGC TGG TGT TTA TTC TTG
#> -0.06542670 0.07779546 -0.16069410 -0.06283650 0.07996641 0.00168099
#> TTT
#> -0.00146340
csc_k562_orfome()
#> AAA AAC AAG AAT ACA ACC
#> -0.082503556 0.047233477 0.061907496 -0.093181619 -0.104350656 0.109884252
#> ACG ACT AGA AGC AGG AGT
#> 0.044688715 -0.077204782 -0.072122377 0.020764902 -0.025678032 -0.110262179
#> ATA ATC ATG ATT CAA CAC
#> -0.054457998 0.143272036 0.090953075 -0.073387738 -0.079564538 -0.025299086
#> CAG CAT CCA CCC CCG CCT
#> -0.027468588 -0.124496511 -0.058929710 0.048258297 0.017257001 -0.067048230
#> CGA CGC CGG CGT CTA CTC
#> -0.108887493 0.080312759 -0.018665000 -0.014334523 -0.049413500 0.142898557
#> CTG CTT GAA GAC GAG GAT
#> 0.133226227 -0.075467506 -0.109476543 -0.044443533 -0.004902221 -0.119047261
#> GCA GCC GCG GCT GGA GGC
#> -0.061083592 0.115365307 0.060036981 -0.009783583 -0.061659031 0.097437328
#> GGG GGT GTA GTC GTG GTT
#> 0.024264833 -0.013606956 -0.076093213 0.134421483 0.104936586 -0.063638071
#> TAC TAT TCA TCC TCG TCT
#> 0.089829145 -0.057669854 -0.095091552 0.058551808 0.013643145 -0.077415637
#> TGC TGG TGT TTA TTC TTG
#> 0.073893721 0.073165018 -0.047843750 -0.105342608 0.138368552 -0.070503663
#> TTT
#> -0.066905273